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nat.templatebrains (version 0.6.1)

NeuroAnatomy Toolbox (nat) Extension for Handling Template Brains

Description

Extends package nat (NeuroAnatomy Toolbox) by providing objects and functions for handling template brains.

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Version

Install

install.packages('nat.templatebrains')

Monthly Downloads

522

Version

0.6.1

License

GPL-3

Maintainer

James Manton

Last Published

October 8th, 2015

Functions in nat.templatebrains (0.6.1)

add_reg_folders

Set or list local folders containing registrations for nat.templatebrains

display_slice

Display an image slice in 3D

templatebrain

Construct templatebrain object for an image registration template

FCWB.demo

Sample template brain: FlyCircuit Whole Brain

plot3d.templatebrain

Plot 3D surface of a template brain

allreg_dataframe

Make data.frame with details of all registrations

xform_brain

Transform 3D object between template brains

mirror_brain

Mirror 3D object around a given axis, optionally using a warping registration

as.templatebrain

Use image file or other object to initialise template brain

templatebrain-meths

Template brain methods

bridging_graph

Make or query connected graph of bridging registrations

local_reg_dir_for_url

Standard local checkout location for extra registration directories

update_reg_repos

Update local copy of git repository containing registrations

download_reg_repo

Download and register git repository containing registrations

nat.templatebrains-package

NeuroAnatomy Toolbox add-on package for handling template brains

bridging_sequence

Find sequence of one or more bridging registrations