all.equal.im3d

target

other R object, to be compared with <code>target</code>.

current

numeric \(\ge\) 0. Differences smaller than
 <code>tolerance</code> are not reported. The default value is close to
 <code>1.5e-8</code>.

tolerance

Which attributes in im3d should always be checked

attrsToCheck

Which attributes in im3d should be checked if
present

attrsToCheckIfPresent

Logical whether to check shared attributes only 
(default: FALSE)

CheckSharedAttrsOnly

additional arguments passed to <code>all.equal</code>

Check equality on data and key attributes of im3d objects

NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D
biological image data, especially traced neurons. Reads and writes 3D images
in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf
format. Traced neurons can be imported from and written to SWC and 'Amira'
LineSet and SkeletonGraph formats. These data can then be visualised in 3D
via 'rgl', manipulated including applying calculated registrations, e.g.
using the 'CMTK' registration suite, and analysed. There is also a simple
representation for neurons that have been subjected to 3D skeletonisation
but not formally traced; this allows morphological comparison between
neurons including searches and clustering (via the 'nat.nblast' extension
package).

all.equal.im3d: Check equality on data and key attributes of im3d objects

Description

Usage

Arguments

See Also