nawtilus (version 0.1.4)

cbcheck: Summarize and plot covariate balance

Description

Summarizes and plots covariate balance between treatment and control groups before and after the navigated weighting.

Usage

cbcheck(
  object,
  addcov = NULL,
  standardize = TRUE,
  plot = TRUE,
  absolute = TRUE,
  threshold = 0,
  sort = TRUE
)

Arguments

object

an object of class <U+201C>nawt<U+201D>, usually, a result of a call to nawt.

addcov

a one-sided formula specifying additional covariates whose balance is checked. Covariates containing NAs are automatically dropped.

standardize

a logical value indicating whether weighted mean differences are standardized or not.

plot

a logical value indicating whether a covariate balance plot is displayed.

absolute

a logical value indicating whether the absolute values of differences in weighted means are used in the covariate balance plot.

threshold

an optional numeric vector used as threshold markers in the covariate balance plot.

sort

a logical value indicating whether covariates in the covariate balance plot are sorted by the values of differences in the weighted means before the navigated weighting.

Value

A matrix whose rows are the covariates and columns are the differences in the (un)standardized weighted mean between the treatment and control groups before (diff.un) and after (diff.adj) the navigated weighting. The standardized weighted mean is the weighted mean divided by the standard deviation of the covariate for the target population (the treatment group for the average treatment effects on the treated estimation and the whole population for the other quantity of interest). The differences in the categorical variables are not standardized.

Details

Position of the legend is determined internally.

Examples

# NOT RUN {
# Simulation from Kang and Shafer (2007) and Imai and Ratkovic (2014)
# ATT estimation
# True ATT is 10
tau <- 10
set.seed(12345)
n <- 1000
X <- matrix(rnorm(n * 4, mean = 0, sd = 1), nrow = n, ncol = 4)
prop <- 1 / (1 + exp(X[, 1] - 0.5 * X[, 2] + 0.25 * X[, 3] + 0.1 * X[, 4]))
treat <- rbinom(n, 1, 1 - prop)
y <- 210 + 27.4 * X[, 1] + 13.7 * X[, 2] + 13.7 * X[, 3] + 13.7 * X[, 4] + 
     tau * treat + rnorm(n)
df <- data.frame(X, treat, y)
colnames(df) <- c("x1", "x2", "x3", "x4", "treat", "y")

# A misspecified model
Xmis <- data.frame(x1mis = exp(X[, 1] / 2), 
                   x2mis = X[, 2] * (1 + exp(X[, 1]))^(-1) + 10,
                   x3mis = (X[, 1] * X[, 3] / 25 + 0.6)^3, 
                   x4mis = (X[, 2] + X[, 4] + 20)^2)

# Data frame and a misspecified formula for propensity score estimation
df <- data.frame(df, Xmis)
formula_m <- as.formula(treat ~ x1mis + x2mis + x3mis + x4mis)

# Misspecified propensity score model
# Power weighting function with alpha = 2
fits2m <- nawt(formula = formula_m, outcome = "y", estimand = "ATT", 
               method = "score", data = df, alpha = 2)
cbcheck(fits2m, addcov = ~ x1 + x2 + x3 + x4)

# Covariate balancing weighting function
fitcbm <- nawt(formula = formula_m, outcome = "y", estimand = "ATT", 
               method = "cb", data = df)
cbcheck(fitcbm, addcov = ~ x1 + x2 + x3 + x4)

# Standard logistic regression
fits0m <- nawt(formula = formula_m, outcome = "y", estimand = "ATT", 
               method = "score", data = df, alpha = 0)
cbcheck(fits0m, addcov = ~ x1 + x2 + x3 + x4)

# Display the covariate balance matrix
cb <- cbcheck(fits2m, addcov = ~ x1 + x2 + x3 + x4, plot = FALSE)
cb
# }