A function to estimate the weights (associative strengths) for cue-outcome pairs when learning is in equilibrium, using the equilibrium equations for the Rescorla-Wagner model of Danks (2003).
estimateWeights(cuesOutcomes, removeDuplicates=TRUE, saveCounts=FALSE,
verbose=FALSE, trueCondProb=TRUE, addBackground=FALSE, hasUnicode=FALSE, …)A data frame with three variables specifying frequency, cues, and
    outcomes, that may be created with ndlCuesOutcomes or
with the accessory script in the inst/scripts directory:
CuesA character vector specifying the cues. When there is more than one cue, the cues should be separated by underscores.
OutcomesA character vector specifying the outcomes. When there is more than one outcome, the outcomes should be separated by underscores.
FrequencyA numeric vector specifying the frequency with which a combination of cues and outcomes occurs.
A logical specifying whether multiple occurrences of a Cue in
    conjunction with an individual instance of an Outcome shall each
    be counted as a distinct occurrence of that Cue (FALSE: default), or
    only as a single occurrence (TRUE).
A logical specifying whether the co-occurrence matrices should be
    saved.  If set equal to TRUE, the files coocCues.rda and
    coocCuesOutcomes.rda will be saved in the current
    working directory.
If set to TRUE, display diagnostic messages.
If you would like to add a background rate for all your cues and outcomes, but did not include an general environment cue to all your events, one will be added for you to the matrices, as specified in Danks (2003). If changed from the default (FALSE) to TRUE, background cues will be added. The name used for the background rates is "Environ", and will be included in the output weight matrix.
The conditional probability calculations used will be those specified in Danks (2003). If changed from the default (TRUE) to FALSE, the normalization specified in Baayen, et al (2011) is used.
A logical specifying whether to apply a UTF-8 to integer conversion to the names of the cues. This was implemented to solve issues with differences Unicode cue names.
Control arguments to be passed along from ndlClassify
    and/or ndlCrossvalidate.
A matrix with cue-to-outcome association strengths. Rows are cues, and columns are outcomes. Rows and columns are labeled. If addBackground=T, a row named "Environ" will be added to the output.
The assistance of Uwe Ligges in getting the C function cooc
  to work within the R framework is greatly appreciated. This C function
  was removed in version 0.2.0 and replaced with the C++ function by
  Cyrus Shaoul.
Using Rcpp, a C++ based implementation processes all of the data in RAM. The module will check the amount of RAM you have available in your system and warn you if the amount of RAM is insufficient to build your model.
For examples of how the cuesOutcomes data frame should be
  structured, see the data sets danks,
  plurals, and serbian. N.B. Empty
  Cues or Outcomes (effectively having length =
  0), e.g. Cues or Outcomes strings with an initial or
  final underscore or two immediately adjacent underscores, will
  result in an error.
Baayen, R. H. and Milin, P. and Filipovic Durdevic, D. and Hendrix, P. and Marelli, M. (2011), An amorphous model for morphological processing in visual comprehension based on naive discriminative learning. Psychological Review, 118, 438-482.
estimateActivations, ndlCuesOutcomes,
   danks, plurals, serbian
# NOT RUN {
  data(danks)
  estimateWeights(cuesOutcomes=danks)
  data(plurals)
  plurals$Cues <- orthoCoding(plurals$WordForm, grams=1)
  round(estimateWeights(cuesOutcomes=plurals),2)
  
  data(serbian)
  serbian$Cues <- orthoCoding(serbian$WordForm, grams=2)
  serbian$Outcomes <- serbian$LemmaCase
  sw <- estimateWeights(cuesOutcomes=serbian)
  round(sw[1:5,1:6],2)
# }
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