BFSlevel

verbose


  <code>BFSlevel</code> builds a (generalized) hierarchy by Breath-First Search as described in (Yu and Gerstein, 2006)


graphs

The package 'nem' allows to reconstruct features of pathways from the nested structure of perturbation effects. It takes as input (1.) a set of pathway components, which were perturbed, and (2.) phenotypic readout of these perturbations (e.g. gene expression, protein expression). The output is a directed graph representing the phenotypic hierarchy.

Holger Froehlich

(Dynamic) Nested Effects Models and Deterministic Effects Propagation Networks to reconstruct phenotypic hierarchies

BFSlevel function

<code>BFSlevel</code> builds a (generalized) hierarchy by Breath-First Search as described in (Yu and Gerstein, 2006)

BFSlevel: Build (generalized) hierarchy by Breath-First Search

Description

Usage

Arguments

Value

Details

Examples