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neotoma (version 1.2-0)

Access to the Neotoma Paleoecological Database Through R

Description

Access paleoecological datasets from the Neotoma Paleoecological Database using the published API (http://api.neotomadb.org/). The functions in this package access various pre-built API functions and attempt to return the results from Neotoma in a usable format for researchers and the public.

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Version

Install

install.packages('neotoma')

Monthly Downloads

20

Version

1.2-0

License

MIT + file LICENSE

Issues

Pull Requests

Stars

Forks

Repository

https://github.com/ropensci/neotoma

Maintainer

Simon J Goring

Last Published

May 3rd, 2015

Functions in neotoma (1.2-0)

Function to bind objects together into a longer object.

get_dataset.site

Obtain dataset information from an existing site object.

get_publication.download_list

A function to get publications for datasets in the Neotoma Database using the API.

get_download.site

Function to return full download records using a site.

Function to return full download records using sites, datasets, or dataset IDs.

Obtain dataset information from the Neotoma Paleoecological Database.

get_download.default

Function to return full download records using numeric dataset IDs.

Function to convert assemblage taxa to standardized lists.

translate.table

A table to convert the original taxa to standardized lists.

get_download.dataset

Function to return full download records using a dataset.

Get taxon information from Neotoma.

Return Site Information.

get_dataset.default

Obtain dataset information from the Neotoma Paleoecological Database or an existing object.

get_site.geochronologic

Return Site Information from a geochronologic

get_dataset.geochronologic_list

Obtain dataset information from an object of class geochronologic_list.

A class for download objects.

get_site.default

Return Site Information.

Get contact information.

get_dataset.download

Obtain dataset information from an existing download object.

get_site.dataset

Return Site Information from a dataset

Write age control file to disk formatted for either Bacon or Clam

get_publication.default

A function to get publications for sites or datasets in the Neotoma Database using the API.

Neotoma taxon list

get_download.dataset_list

Function to return full download records using a dataset_list.

get_dataset.geochronologic

Obtain dataset information from an object of class geochronologic.

get_publication.download

A function to get publications for downloads in the Neotoma Database using the API.

get_publication

A function to get publications for sites or datasets in the Neotoma Database using the API.

Get Neotoma value tables.

get_site.download_list

Return Site Information from a download_list

Return Site Information.

compile_downloads

Function to convert multiple downloads into a single large table.

Internal function to check passed parameters.

Function to return geochronological data from records.

A table to convert the pollen taxa identified by investigators to standardized lists.

get_site.geochronologic_list

Return Site Information from a geochronologic_list

A list of all the geopolitical entities in the Neotoma database.

get_site.download

Return Site Information from a download

get_chroncontrol

Function to return chronological control tables used to build age models.

get_dataset.download_list

Obtain dataset information from a download_list.

Access proxy count data

Get contact information.

Obtain dataset information from the Neotoma Paleoecological Database or an existing object.

get_publication.dataset_list

A function to get publications for dataset_lists in the Neotoma Database using the API.

Deprecated function to convert assemblage taxa to standardized lists.

get_publication.dataset

A function to get publications for datasets in the Neotoma Database using the API.

get_site.dataset_list

Return Site Information from a dataset_list