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neotoma (version 1.4.0)

Access to the Neotoma Paleoecological Database Through R

Description

Access paleoecological datasets from the Neotoma Paleoecological Database using the published API (http://api.neotomadb.org/). The functions in this package access various pre-built API functions and attempt to return the results from Neotoma in a usable format for researchers and the public.

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Version

Install

install.packages('neotoma')

Monthly Downloads

20

Version

1.4.0

License

MIT + file LICENSE

Issues

Pull Requests

Stars

Forks

Repository

https://github.com/ropensci/neotoma

Maintainer

Simon J Goring

Last Published

September 25th, 2015

Functions in neotoma (1.4.0)

Get contact information.

get_dataset.site

Obtain dataset information from an existing site object.

get_dataset.geochronologic_list

Obtain dataset information from an object of class geochronologic_list.

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

A class for download objects.

browse.download_list

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

Get Neotoma value tables.

get_chroncontrol.download

Function to return chronological control tables from a download object.

get_dataset.download

Obtain dataset information from an existing download object.

Obtain dataset information from the Neotoma Paleoecological Database or an existing object.

Get contact information.

translate.table

A table to convert the original taxa to standardized lists.

get_chroncontrol

Function to return chronological control tables used to build age models.

get_chroncontrol.default

Function to return chronological control tables from a chronologic ID.

get_site.geochronologic_list

Return Site Information from a geochronologic_list

get_chroncontrol.download_list

Function to return chronological control tables from a download_list object.

compile_downloads

Function to convert multiple downloads into a single large table.

get_publication.default

A function to get publications for sites or datasets in the Neotoma Database using the API.

get_publication.dataset_list

A function to get publications for dataset_lists in the Neotoma Database using the API.

Obtain dataset information from the Neotoma Paleoecological Database.

Function to convert assemblage taxa to standardized lists.

Return Site Information.

get_download.site

Function to return full download records using a site.

Get taxon information from Neotoma.

get_site.download_list

Return Site Information from a download_list

get_site.dataset_list

Return Site Information from a dataset_list

Internal function to check passed parameters.

get_download.default

Function to return full download records using numeric dataset IDs.

Function to return geochronological data from records.

Access proxy count data

A table to convert the pollen taxa identified by investigators to standardized lists.

get_download.dataset

Function to return full download records using a dataset.

get_site.default

Return Site Information.

get_publication.dataset

A function to get publications for datasets in the Neotoma Database using the API.

Neotoma taxon list

Write age control file to disk formatted for either Bacon or Clam

Return Site Information.

browse.dataset_list

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

get_dataset.geochronologic

Obtain dataset information from an object of class geochronologic.

Function to return full download records using sites, datasets, or dataset IDs.

get_dataset.download_list

Obtain dataset information from a download_list.

get_dataset.default

Obtain dataset information from the Neotoma Paleoecological Database or an existing object.

get_publication.download_list

A function to get publications for datasets in the Neotoma Database using the API.

get_publication

A function to get publications for sites or datasets in the Neotoma Database using the API.

get_publication.download

A function to get publications for downloads in the Neotoma Database using the API.

A list of all the geopolitical entities in the Neotoma database.

Function to bind objects together into a longer object.

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

browse.download

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

get_download.dataset_list

Function to return full download records using a dataset_list.

get_site.download

Return Site Information from a download

get_site.dataset

Return Site Information from a dataset

get_site.geochronologic

Return Site Information from a geochronologic