Learn R Programming

⚠️There's a newer version (1.7.4) of this package.Take me there.

neotoma (version 1.5.0)

Access to the Neotoma Paleoecological Database Through R

Description

Access paleoecological datasets from the Neotoma Paleoecological Database using the published API (http://api.neotomadb.org/). The functions in this package access various pre-built API functions and attempt to return the results from Neotoma in a usable format for researchers and the public.

Copy Link

Version

Install

install.packages('neotoma')

Monthly Downloads

20

Version

1.5.0

License

MIT + file LICENSE

Issues

Pull Requests

Stars

Forks

Repository

https://github.com/ropensci/neotoma

Maintainer

Simon J Goring

Last Published

February 29th, 2016

Functions in neotoma (1.5.0)

get_chroncontrol

Function to return chronological control tables used to build age models.

A class for download objects.

Function to bind objects together into a longer object.

get_chroncontrol.default

Function to return chronological control tables from a chronologic ID.

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

Access proxy count data

get_dataset.site

Obtain dataset information from an existing site object.

get_dataset.download_list

Obtain dataset information from a download_list.

Get contact information.

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

get_dataset.geochronologic

Obtain dataset information from an object of class geochronologic.

get_download.dataset

Function to return full download records using a dataset.

get_site.dataset_list

Return Site Information from a dataset_list

get_chroncontrol.download

Function to return chronological control tables from a download object.

get_download.default

Function to return full download records using numeric dataset IDs.

Function to return geochronological data from records.

Function to convert assemblage taxa to standardized lists.

browse.download

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

A table to convert the pollen taxa identified by investigators to standardized lists.

get_publication.download

A function to get publications for downloads in the Neotoma Database using the API.

compile_downloads

Function to convert multiple downloads into a single large table.

get_chroncontrol.download_list

Function to return chronological control tables from a download_list object.

get_site.download_list

Return Site Information from a download_list

get_download.dataset_list

Function to return full download records using a dataset_list.

get_download.site

Function to return full download records using a site.

get_site.download

Return Site Information from a download

Read proxy data from Tilia TLX files

get_publication.download_list

A function to get publications for datasets in the Neotoma Database using the API.

get_site.geochronologic

Return Site Information from a geochronologic

get_site.default

Return Site Information.

get_publication.dataset

A function to get publications for datasets in the Neotoma Database using the API.

get_dataset.download

Obtain dataset information from an existing download object.

get_dataset.geochronologic_list

Obtain dataset information from an object of class geochronologic_list.

get_dataset.default

Obtain dataset information from the Neotoma Paleoecological Database or an existing object.

get_site.dataset

Return Site Information from a dataset

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

Return Site Information.

Function to return full download records using sites, datasets, or dataset IDs.

Get taxon information from Neotoma.

Write age control file to disk formatted for either Bacon or Clam

Internal function to check passed parameters.

get_publication.default

A function to get publications for sites or datasets in the Neotoma Database using the API.

Get Neotoma value tables.

get_site.geochronologic_list

Return Site Information from a geochronologic_list

browse.download_list

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

A list of all the geopolitical entities in the Neotoma database.

browse.dataset_list

Open a browser window to display a Neotoma dataset within the Neotoma Explorer

Neotoma taxon list

Obtain dataset information from the Neotoma Paleoecological Database or an existing object.

get_publication

A function to get publications for sites or datasets in the Neotoma Database using the API.

get_publication.dataset_list

A function to get publications for dataset_lists in the Neotoma Database using the API.

translate.table

A table to convert the original taxa to standardized lists.