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netbenchmark (version 1.4.2)
Benchmarking of several gene network inference methods
Description
This package implements a benchmarking of several gene network inference algorithms from gene expression data.
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Version
Version
1.4.2
1.4.0
1.2.0
1.0.3
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Version
1.4.2
License
CC BY-NC-SA 4.0
Maintainer
Pau Bellot
Last Published
August 8th, 2015
Functions in netbenchmark (1.4.2)
Search functions
RegisterWrapper
Wrapper (un)registration routine
pcit.wrap
pcit wrapper function
GeneNet.wrap
GeneNet wrapper function
aracne.wrap
aracne wrapper function
mutrank.wrap
Mutual Rank wrapper function
datasource.subsample
Subsampling datasource procedure
comp.metr
Compute metrics
netbenchmark.data
Benchmarking of several network inference algorithms for your own data
zscore.wrap
Zscore wrapper function
c3net.wrap
c3net wrapper function
mrnet.wrap
mrnet wrapper function
ntb_globals
Available wrappers in the package of the fast methods
rate
Inference Validation
netbenchmark-package
Benchmarking of several inference networks methods
netbenchmark
Benchmarking of several network inference algorithms from data
experiments.bench
Noise sensitivity benchmark
noise.bench
Noise sensitivity test
Genie3.wrap
Genie3 wrapper function
zsc
Z-score c++ function
clr.wrap
CLR wrapper function
evaluate
Inference Evaluation
mrnetb.wrap
mrnetb wrapper function