netcom (version 2.1.6)

stir_NM: Stirs a Niche Model Network

Description

Stirs an already existing network by rewiring a node according to the Niche Model mechanism.

Usage

stir_NM(matrix, x, niches, directed = TRUE, connectance = 0.2)

Value

An adjacency matrix.

Arguments

matrix

Existing network to experience rewiring (stirring).

x

The ID of the node to be grown.

niches

Vector of length x, with values between zero and one corresponding to each node's niche.

directed

Binary variable determining if the network is directed, resulting in off-diagonal asymmetry in the adjacency matrix. Defaults to TRUE.

connectance

Niche Model parameter specifying the expected connectivity of the network, which determines for a given node the niche space window within which it attaches to every other node. Defaults to 0.2.

Details

Stirs a node in a Niche Model network.

References

Williams, R. J., & Martinez, N. D. (2000). Simple rules yield complex food webs. Nature, 404(6774), 180-183.

Examples

# Import netcom
library(netcom)

size <- 10
existing_network <- matrix(sample(c(0,1), size = size^2, replace = TRUE), nrow = size, ncol = size)
new_network_prep <- matrix(0, nrow = size + 1, ncol = size + 1)
new_network_prep[1:size, 1:size] = existing_network
new_network <- stir_NM(
     matrix = new_network_prep, 
     x = size + 1, 
     connectance = 0.1, 
     niches = runif(size + 1)
)