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netgsa (version 2.0)

Network-Based Gene Set Analysis

Description

The netgsa-package contains functions for carrying out Network-based Gene Set Analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data.

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Version

Install

install.packages('netgsa')

Monthly Downloads

282

Version

2.0

License

GPL (>= 2)

Maintainer

Jing Ma

Last Published

March 8th, 2015

Functions in netgsa (2.0)

nonedgelist

An example for not-an-edge list
edgelist

An example edge list
NetGSA

Network-based Gene Set Analysis
netgsa-package

Network-Based Gene Set Analysis
edgelist2adj

Construct an adjacency matrix from an edge list
netgsaex

Toy example for using NetGSA on a two-class test
cv.covsel

Cross-validation for covsel
covsel

Covariance selection