⚠️There's a newer version (4.0.5) of this package.Take me there.

netgsa (version 3.0)

Network-Based Gene Set Analysis

Description

Carry out Network-based Gene Set Analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data.

Copy Link

Version

Install

install.packages('netgsa')

Monthly Downloads

282

Version

3.0

License

GPL (>= 2)

Maintainer

Jing Ma

Last Published

June 16th, 2016

Functions in netgsa (3.0)

netgsaex2

Toy example for using NetGSA on a two-class test with undirected networks

netgsaex3

Toy example for using NetGSA on a three-class test with undirected networks

edgelist2adj

Construct an adjacency matrix from an edge list

netgsaexDAG

Toy example for using NetGSA on a two-class test with directed acyclic graphs

edgelist

An example edge list

nonedgelist

An example for not-an-edge list

netEst.undir

Constrained estimation of undirected networks

netgsa-package

Network-Based Gene Set Analysis

NetGSA

Network-based Gene Set Analysis

bic.netEst.undir

Bayesian information criterion to select the tuning parameters for netEst.undir

netEst.dir

Constrained estimation of directed networks