netgwas (version 0.0.1-1)

plot.netgwasmap: plot for S3 class "netgwasmap"

Description

Plot the graph associated with constructed linkage map via function netmap.

Usage

# S3 method for netgwasmap
plot( x,  layout, vertex.size, vertex.label, label.size, vertex.color, ... )

Arguments

x

An object from "netgwasmap" class.

layout

The vertex placement algorithm which is according to igraph package

vertex.size

Optional integer to adjust vertex size in graph G. Default is 5.

vertex.label

To show the label of vertices. Default is FALSE.

label.size

Optional integer to adjust the size of node's label in graph G. Applicable when vertex.label is TRUE. Default is 0.8.

vertex.color

Optional integer vectors giving colors to the vertices.

System reserved (no specific usage)

References

1. Behrouzi, P., and Wit, E. C. (2017b). De novo construction of q-ploid linkage maps using discrete graphical models. arXiv preprint, arXiv:1710.01063. 2. Behrouzi, P., and Wit, E. C. (2017c). netgwas: An R Package for Network-Based Genome-Wide Association Studies. arXiv preprint, arXiv:1710.01236.

See Also

netmap.