netgwas (version 1.14.3)

CviCol: Arabidopsis thaliana genotype data

Description

The genotype data of the Cvi-0 \(\times\) Col-0 Recombinant Inbred Line (RIL) population.

Usage

data(CviCol)

Format

The format is a matrix containing 90 single-nucleotide polymorphism (SNP) markers for 367 individuals.

Author

Pariya Behrouzi and Ernst C. Wit
Maintainer: Pariya Behrouzi

Details

The Arabidopsis thaliana genotype data is derived from a RIL cross between Columbia-0 (Col-0) and the Cape Verde Island (Cvi-0), where 367 individuals were genotyped for 90 genetic markers. This is a diploid population with three possible genotpe states (k = 3), where the genotypes coded as 0, 1, 2, where 0 and 2 represent the homozygous genotypes and 1 defines the heterozygous genotype.
This data set can be used to detect epistatic selection, short- and long- range linkage disequilibrium between 90 SNP markers.

Examples

data(CviCol)
dim(CviCol)
head(CviCol, n=3)