lower.upper

Calculates lower and upper bands for each data point, using a set of cut-points which is obtained from the Gaussian copula.

A multi-core R package that contains a set of tools based on copula graphical
models for accomplishing the three interrelated goals in genetics and genomics in an
unified way: (1) linkage map construction, (2) constructing linkage disequilibrium
networks, and (3) exploring high-dimensional genotype-phenotype network and genotype-
phenotype-environment interactions networks.
The 'netgwas' package can deal with biparental inbreeding and outbreeding species with
any ploidy level, namely diploid (2 sets of chromosomes), triploid (3 sets of chromosomes),
tetraploid (4 sets of chromosomes) and so on. We target on high-dimensional data where
number of variables p is considerably larger than number of sample sizes (p >> n).
The computations is memory-optimized using the sparse matrix output. The 'netgwas'
implements the methodological developments in Behrouzi and Wit (2017)
<doi:10.1111/rssc.12287> and Behrouzi and Wit (2017) <doi:10.1093/bioinformatics/bty777>.

Pariya Behrouzi

netgwas

Network-Based Genome Wide Association Studies

Ernst C. Wit

lower.upper function

<dl>	<dt>y</dt>
<dd>An (\(n \times p\)) matrix or a <code>data.frame</code> corresponding to the data matrix (\(n\) is the sample size and \(p\) is the number of variables). It also could be an object of class <code>"episim"</code>.</dd></dl>

Arguments

Pariya Behrouzi and Ernst C. Wit 
 Maintainer: Pariya Behrouzi &lt;pariya.behrouzi@gmail.com&gt;

Author

Calculates lower band and upper band — lower.upper

<dl>

	<dt>y</dt>
<dd>An (\(n \times p\)) matrix or a <code>data.frame</code> corresponding to the data matrix (\(n\) is the sample size and \(p\) is the number of variables). It also could be an object of class <code>"episim"</code>.</dd>

</dl>

Pariya Behrouzi and Ernst C. Wit 
 Maintainer: Pariya Behrouzi &lt;pariya.behrouzi@gmail.com&gt;

lower.upper: Calculates lower band and upper band

Description

Usage

Value

Arguments

Author

References

See Also

Examples