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nethet (version 1.4.2)

shapiro_screen: Filter "non-normal" genes

Description

Filter "non-normal" genes

Usage

shapiro_screen(x1, x2, sign.level = 0.001)

Arguments

x1
expression matrix (condition 1)
x2
expression matrix (condition 2)
sign.level
sign.level in Shapiro-Wilk tests (default: sign.level=0.001)

Value

  • list consisting of
  • x1.filtexpression matrix (condition 1) after filtering
  • x2.filtexpression matrix (condition 2) after filtering

Details

Discarding genes which have Shapiro-Wilk p-value (corrected for multiplicity) smaller than sign.level in either of the two conditions. We used sign.level=0.001 in the GGMGSA paper.