check_netmhc2pan_data_url

Check the URL of the NetMHCIIpan binary tarball is valid,
will stop if not.
This URL link expires after 4 hours.

The field of immunology benefits from software that can
predict which peptide sequences trigger an immune response.
'NetMHCIIpan' is a such a tool: it predicts the
binding strength of a short peptide to a Major Histocompatibility
Complex class II (MHC-II) molecule.
'NetMHCIIpan' can be used from a web server at
<https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/>
or from the command-line, using a local installation. This package
allows to call 'NetMHCIIpan' from R.

Richel Bilderbeek

netmhc2pan

Interface to 'NetMHCIIpan'

Richèl J.C. Bilderbeek

Lue Ping Zhao

Byungkuk Min

check_netmhc2pan_data_url function

<dl><dt>netmhc2pan_data_url</dt>
<dd>URL to download the
NetMHCIIpan data tarball file from,
similar to, for example,
<a href="https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/data.Linux.tar.gz">https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/data.Linux.tar.gz</a>.
Use get_netmhc2pan_data_url to get the default URL.</dd>
<dt>verbose</dt>
<dd>set to TRUE for more output</dd>
<dt>temp_local_file</dt>
<dd>path to the temporary file to store the URL to.
This file will be deleted afterwards.</dd></dl>

Arguments

Check the URL of the NetMHCIIpan binary tarball — check_netmhc2pan_data_url

<dl>

<dt>netmhc2pan_data_url</dt>
<dd>URL to download the
NetMHCIIpan data tarball file from,
similar to, for example,
<a href='https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/data.Linux.tar.gz'>https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/data.Linux.tar.gz</a>.
Use get_netmhc2pan_data_url to get the default URL.</dd>


<dt>verbose</dt>
<dd>set to TRUE for more output</dd>


<dt>temp_local_file</dt>
<dd>path to the temporary file to store the URL to.
This file will be deleted afterwards.</dd>

</dl>

check_netmhc2pan_data_url: Check the URL of the NetMHCIIpan binary tarball

Description

Usage

Value

Arguments