Install NetMHCIIpan to a local folder, by downloading the binary and data files. Use install_netmhc2pan_from_files to install NetMHCIIpan from files that are already downloaded.
install_netmhc2pan(
netmhc2pan_bin_url = get_netmhc2pan_bin_url(),
netmhc2pan_data_url = get_netmhc2pan_data_url(),
verbose = FALSE,
netmhc2pan_archive_filename = get_netmhc2pan_archive_filename(),
netmhc2pan_folder_name = get_default_netmhc2pan_folder(),
temp_local_file = tempfile(pattern = "netmhc2pan_install_netmhc2pan_")
)Nothing
URL to download the
NetMHCIIpan binary tarball file from,
similar to, for example,
https://www.cbs.dtu.dk/download/12345678-1234-1234-1234-123456789ABC.
Use get_netmhc2pan_bin_url to get the default URL.
URL to download the NetMHCIIpan data tarball file from, similar to, for example, https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/data.Linux.tar.gz. Use get_netmhc2pan_data_url to get the default URL.
set to TRUE for more output
the NetMHC2pan archive
filename, for example netMHCIIpan-3.2.Linux.tar.gz,
which is used in installation of NetMHC2pan.
Use get_netmhc2pan_archive_filename to get this filename.
the folder (to be) used by NetMHCIIpan. From this location, a subfolder for NetMHCIIpan is created. Use get_default_netmhc2pan_folder to see the location of the default NetMHCIIpan folder. Use get_default_netmhc2pan_subfolder to see the location of the default NetMHCIIpan subfolder.
path to the temporary file to store the URL to. This file will be deleted afterwards.
Richèl J.C. Bilderbeek
These are three steps:
Install the NetMHCIIpan binary, using install_netmhc2pan_bin
Install the NetMHCIIpan data, using install_netmhc2pan_data
Set up NetMHCIIpan, using set_up_netmhc2pan