install_netmhc2pan_data_from_file

Install the NetMHCIIpan data from the NetMHCIIpan data tarball file
to the default NetMHCIIpan folder.

The field of immunology benefits from software that can
predict which peptide sequences trigger an immune response.
'NetMHCIIpan' is a such a tool: it predicts the
binding strength of a short peptide to a Major Histocompatibility
Complex class II (MHC-II) molecule.
'NetMHCIIpan' can be used from a web server at
<https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/>
or from the command-line, using a local installation. This package
allows to call 'NetMHCIIpan' from R.

Richel Bilderbeek

netmhc2pan

Interface to 'NetMHCIIpan'

Richèl J.C. Bilderbeek

Lue Ping Zhao

Byungkuk Min

install_netmhc2pan_data_from_file function

<dl><dt>netmhc2pan_data_tarfile_path</dt>
<dd>path of the
NetMHCIIpan data tarball file</dd>
<dt>netmhc2pan_folder_name</dt>
<dd>the folder (to be) used by NetMHCIIpan.
From this location, a subfolder for NetMHCIIpan is created.
Use get_default_netmhc2pan_folder to see the location
of the default NetMHCIIpan folder.
Use get_default_netmhc2pan_subfolder to see the location
of the default NetMHCIIpan subfolder.</dd>
<dt>verbose</dt>
<dd>set to TRUE for more output</dd></dl>

Arguments

Author

Install the NetMHCIIpan data from file — install_netmhc2pan_data_from_file

<dl>

<dt>netmhc2pan_data_tarfile_path</dt>
<dd>path of the
NetMHCIIpan data tarball file</dd>


<dt>netmhc2pan_folder_name</dt>
<dd>the folder (to be) used by NetMHCIIpan.
From this location, a subfolder for NetMHCIIpan is created.
Use get_default_netmhc2pan_folder to see the location
of the default NetMHCIIpan folder.
Use get_default_netmhc2pan_subfolder to see the location
of the default NetMHCIIpan subfolder.</dd>


<dt>verbose</dt>
<dd>set to TRUE for more output</dd>

</dl>

install_netmhc2pan_data_from_file: Install the NetMHCIIpan data from file

Description

Usage

Value

Arguments

Author

Details