install_netmhc2pan_from_files: Install NetMHCIIpan from files.

Description

Install NetMHCIIpan to a local folder from (already downloaded) binary and date tarball files. Use install_netmhc2pan to install NetMHCIIpan by downloading these files

Usage

install_netmhc2pan_from_files(
  netmhc2pan_bin_tarfile_path,
  netmhc2pan_data_tarfile_path,
  verbose = FALSE,
  netmhc2pan_archive_filename = get_netmhc2pan_archive_filename(),
  netmhc2pan_folder_name = get_default_netmhc2pan_folder(),
  temp_local_file = tempfile(pattern = "netmhc2pan_install_netmhc2pan_")
)

Value

Nothing

Arguments

netmhc2pan_bin_tarfile_path: path of the NetMHCIIpan binary tarball file
netmhc2pan_data_tarfile_path: path of the NetMHCIIpan data tarball file
verbose: set to TRUE for more output
netmhc2pan_archive_filename: the NetMHC2pan archive filename, for example netMHCIIpan-3.2.Linux.tar.gz, which is used in installation of NetMHC2pan. Use get_netmhc2pan_archive_filename to get this filename.
netmhc2pan_folder_name: the folder (to be) used by NetMHCIIpan. From this location, a subfolder for NetMHCIIpan is created. Use get_default_netmhc2pan_folder to see the location of the default NetMHCIIpan folder. Use get_default_netmhc2pan_subfolder to see the location of the default NetMHCIIpan subfolder.
temp_local_file: path to the temporary file to store the URL to. This file will be deleted afterwards.

Author

Richèl J.C. Bilderbeek

Details

These are three steps:

Install the NetMHCIIpan binary, using install_netmhc2pan_bin_from_file
Install the NetMHCIIpan data, using install_netmhc2pan_data_from_file
Set up NetMHCIIpan, using set_up_netmhc2pan