netmhc2pan_report

Show a <code>netmhc2pan</code> report using <a href="/link/message?package=netmhc2pan&version=1.3.2" data-mini-rdoc="netmhc2pan::message">message</a>,
to be used when reporting bugs

The field of immunology benefits from software that can
predict which peptide sequences trigger an immune response.
'NetMHCIIpan' is a such a tool: it predicts the
binding strength of a short peptide to a Major Histocompatibility
Complex class II (MHC-II) molecule.
'NetMHCIIpan' can be used from a web server at
<https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/>
or from the command-line, using a local installation. This package
allows to call 'NetMHCIIpan' from R.

Richel Bilderbeek

netmhc2pan

Interface to 'NetMHCIIpan'

Richèl J.C. Bilderbeek

Lue Ping Zhao

Byungkuk Min

netmhc2pan_report function

<dl><dt>netmhc2pan_folder_name</dt>
<dd>the folder (to be) used by NetMHCIIpan.
From this location, a subfolder for NetMHCIIpan is created.
Use get_default_netmhc2pan_folder to see the location
of the default NetMHCIIpan folder.
Use get_default_netmhc2pan_subfolder to see the location
of the default NetMHCIIpan subfolder.</dd></dl>

Arguments

Author

Show a <code>netmhc2pan</code> report using <a href='https://rdrr.io/r/base/message.html'>message</a>,
to be used when reporting bugs

Show a netmhc2pan report using message,
to be used when reporting bugs — netmhc2pan_report

<dl>

<dt>netmhc2pan_folder_name</dt>
<dd>the folder (to be) used by NetMHCIIpan.
From this location, a subfolder for NetMHCIIpan is created.
Use get_default_netmhc2pan_folder to see the location
of the default NetMHCIIpan folder.
Use get_default_netmhc2pan_subfolder to see the location
of the default NetMHCIIpan subfolder.</dd>

</dl>

Show a <code>netmhc2pan</code> report using <a href='https://rdrr.io/r/base/message.html'>message</a>,
to be used when reporting bugs

Show a <code>netmhc2pan</code> report using <a href="/link/message?package=netmhc2pan&version=1.3.2" data-mini-rdoc="netmhc2pan::message">message</a>,
to be used when reporting bugs

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netmhc2pan_report: Show a `netmhc2pan` report using message, to be used when reporting bugs

Description

Usage

Value

Arguments

Author

Examples