netmhc2pan_self_test

Test NetMHCIIpan by doing a minimal run.

The field of immunology benefits from software that can
predict which peptide sequences trigger an immune response.
'NetMHCIIpan' is a such a tool: it predicts the
binding strength of a short peptide to a Major Histocompatibility
Complex class II (MHC-II) molecule.
'NetMHCIIpan' can be used from a web server at
<https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/>
or from the command-line, using a local installation. This package
allows to call 'NetMHCIIpan' from R.

Richel Bilderbeek

netmhc2pan

Interface to 'NetMHCIIpan'

Richèl J.C. Bilderbeek

Lue Ping Zhao

Byungkuk Min

netmhc2pan_self_test function

<dl><dt>netmhc2pan_folder_name</dt>
<dd>the folder (to be) used by NetMHCIIpan.
From this location, a subfolder for NetMHCIIpan is created.
Use get_default_netmhc2pan_folder to see the location
of the default NetMHCIIpan folder.
Use get_default_netmhc2pan_subfolder to see the location
of the default NetMHCIIpan subfolder.</dd>
<dt>verbose</dt>
<dd>set to TRUE for more output</dd></dl>

Arguments

Author

Test NetMHCIIpan by doing a minimal run. — netmhc2pan_self_test

<dl>

<dt>netmhc2pan_folder_name</dt>
<dd>the folder (to be) used by NetMHCIIpan.
From this location, a subfolder for NetMHCIIpan is created.
Use get_default_netmhc2pan_folder to see the location
of the default NetMHCIIpan folder.
Use get_default_netmhc2pan_subfolder to see the location
of the default NetMHCIIpan subfolder.</dd>


<dt>verbose</dt>
<dd>set to TRUE for more output</dd>

</dl>

netmhc2pan_self_test: Test NetMHCIIpan by doing a minimal run.

Description

Usage

Value

Arguments

Author