to_netmhc2pan_name

Convert a formal MHC-II haplotype name to the notation used by NetMHC2pan.

The field of immunology benefits from software that can
predict which peptide sequences trigger an immune response.
'NetMHCIIpan' is a such a tool: it predicts the
binding strength of a short peptide to a Major Histocompatibility
Complex class II (MHC-II) molecule.
'NetMHCIIpan' can be used from a web server at
<https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/>
or from the command-line, using a local installation. This package
allows to call 'NetMHCIIpan' from R.

Richel Bilderbeek

netmhc2pan

Interface to 'NetMHCIIpan'

Richèl J.C. Bilderbeek

Lue Ping Zhao

Byungkuk Min

to_netmhc2pan_name function

<dl><dt>mhc_haplotype</dt>
<dd>one MHC haplotype, e.g. <code>DRB1_0101</code>.
See get_netmhc2pan_alleles for a full list</dd></dl>

Arguments

Convert a formal haplotype name to its NetMHC2pan notation — to_netmhc2pan_name

<dl>

<dt>mhc_haplotype</dt>
<dd>one MHC haplotype, e.g. <code>DRB1_0101</code>.
See get_netmhc2pan_alleles for a full list</dd>

</dl>

to_netmhc2pan_name: Convert a formal haplotype name to its NetMHC2pan notation

Description

Usage

Value

Arguments

Examples