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netresponse (version 1.32.2)

factor.responses: Factor responses

Description

List responses for each level of the given factor

Usage

factor.responses(annotation.vector, groupings, method = "hypergeometric",
  min.size = 2, data = NULL)

Arguments

annotation.vector
annotation vector with discrete factor levels, and named by the samples
groupings
List of groupings. Each model should have a sample-cluster assignment matrix qofz, or a vector of cluster indices named by the samples.
method
method for enrichment calculation
min.size
minimum sample size for a response
data
data (samples x features; or a vector in univariate case)

Value

  • List with each element corresponding to one factor level and listing the responses according to association strength

References

See citation("netresponse")