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netresponse (version 1.32.2)

list.responses.factor: List significant responses

Description

List significantly associated responses for all factors and levels in the given annotation matrix

Usage

list.responses.factor(annotation.df, models, method = "hypergeometric",
  min.size = 2, qth = Inf, verbose = TRUE, data = NULL,
  rounding = NULL)

Arguments

annotation.df
annotation data.frame with discrete factor levels, rows named by the samples
models
List of models. Each model should have a sample-cluster assignment matrix qofz, or a vector of cluster indices named by the samples.
method
method for enrichment calculation
min.size
minimum sample size for a response
qth
q-value threshold
verbose
verbose
data
data (samples x features; or a vector in univariate case)
rounding
rounding digits

Value

  • Table listing all associations between the factor levels and responses

References

See citation("netresponse")