netresponse (version 1.32.2)

list.responses.factor.minimal: List factor responses (minimal)

Description

List significantly associated responses for all factors and levels in the given annotation matrix

Usage

list.responses.factor.minimal(annotation.df, groupings,
  method = "hypergeometric", min.size = 2, pth = Inf, verbose = TRUE,
  data = NULL, rounding = NULL)

Arguments

annotation.df

annotation data.frame with discrete factor levels, rows named by the samples

groupings

List of groupings. Each model should have a sample-cluster assignment matrix qofz, or a vector of cluster indices named by the samples.

method

method for enrichment calculation

min.size

minimum sample size for a response

pth

p-value threshold; applied to adjusted p-value

verbose

verbose

data

data (samples x features; or a vector in univariate case)

rounding

rounding digits

Value

• A list with two elements: Table listing all associations between the factor levels and responses; multiple p-value adjustment method

References

See citation("netresponse")