netresponse (version 1.32.2)

plot_response: plot_response

Description

Plot a specific transcriptional response for a given subnetwork. TRUE, colors = TRUE, plot_type = "twopi", ...)

Usage

plot_response(x, mynet, mybreaks, mypalette, plot_names = TRUE,
  colors = TRUE, plot_type = "twopi", ...)

Arguments

x

A numerical vector, or NULL.

mynet

Binary matrix specifying the interactions between nodes.

mybreaks

Specify breakpoints for color plot_

mypalette

Specify palette for color plot_

plot_names

Plot node names (TRUE) or indices (FALSE).

colors

Plot colors. Logical.

plot_type

Network plot mode. For instance, 'neato' or 'twopi'.

...

Further arguments for plot function.

Value

• Used for its side-effects.

References

L. Lahti et al.: Global modeling of transcriptional responses in interaction networks. Submitted.

Examples

#tmp <- plot_response(model, mynet, 
#  	maintext = paste("Subnetwork", subnet.id))