netresponse (version 1.32.2)

response.enrichment: Enrichment for a specified sample group in the given response.

Description

Calculate enrichment values for a specified sample group in the given response.

Usage

response.enrichment(total.samples, response.samples, annotated.samples,
  method = "hypergeometric")

Arguments

total.samples

All samples in the data

response.samples

Samples in the investigated subset

annotated.samples

Samples at the investigated annotation level for enrichment calculation

method

Enrichment method.

Value

• List with enrichment statistics, depending on enrichment method.

References

See citation("netresponse")

See Also

order.responses

Examples

#enr <- response.enrichment(subnet.id, models, sample, response, method)