getSPMbinary

Extracts voxel coordinates where <code>pet = 1</code> (i.e., statistically significant points)
from a binary NIfTI file produced by an external SPM analysis.
Only voxels from a specific brain slice (<code>z = paramZ</code>) are retained.
The output data frame is structured identically to that of <code>getPoints</code>,
allowing direct comparison between SCC- and SPM-detected regions via <code>calculateMetrics</code>.

Tools for the structured processing of PET neuroimaging data
in preparation for the estimation of Simultaneous Confidence Corridors (SCCs)
for one-group, two-group, or single-patient vs group comparisons.
The package facilitates PET image loading, data restructuring, integration
into a Functional Data Analysis framework, contour extraction, identification
of significant results, and performance evaluation. It bridges established
packages (e.g., 'oro.nifti') with novel statistical methodologies (e.g.,
'ImageSCC') and enables reproducible analysis pipelines, including
comparison with Statistical Parametric Mapping ('SPM').

Juan A. Arias Lopez

neuroSCC

Bridging Simultaneous Confidence Corridors and PET Neuroimaging

getSPMbinary function

<dl><dt>niftiFile</dt>
<dd><code>character</code>. The path to the binary NIfTI file generated by SPM.</dd>
<dt>paramZ</dt>
<dd><code>integer</code>. The specific z-slice to extract. Default is <code>35</code>.</dd></dl>

Arguments

Extract SPM-Detected Significant Points from a Binary NIfTI File — getSPMbinary

<dl>

<dt>niftiFile</dt>
<dd><code>character</code>. The path to the binary NIfTI file generated by SPM.</dd>


<dt>paramZ</dt>
<dd><code>integer</code>. The specific z-slice to extract. Default is <code>35</code>.</dd>

</dl>

getSPMbinary: Extract SPM-Detected Significant Points from a Binary NIfTI File

Description

Usage

Value

Arguments

Details

See Also

Examples