anno

annotation data for all NIDPs taken from the UKbiobank

Contains functions to query and visualize the Neuroimaging features
associated with genetically regulated gene expression (GReX). The primary utility,
neuroimaGene(), relies on a list of user-defined genes and returns a table of
neuroimaging features (NIDPs) associated with each gene. This resource
is designed to assist in the interpretation of genome-wide and transcriptome-wide
association studies that evaluate brain related traits. Bledsoe (2024)
<doi:10.1016/j.ajhg.2024.06.002>. In addition there are several visualization
functions that generate summary plots and 2-dimensional visualizations of regional
brain measures. Mowinckel (2020).

Xavier Bledsoe

neuroimaGene

Transcriptomic Atlas of Neuroimaging Derived Phenotypes

Eric Gamazon

anno function

A data.table with 10 columns and 3935 rows:<dl>
 <dt>gwas_phenotype</dt>
<dd>character: UKB-derived neuroimaging derived phenotype (NIDP)</dd> <dt>modality</dt>
<dd>character: MRI neuroimaging modality</dd> <dt>atlas</dt>
<dd>character: neuroimaging cortical atlas</dd> <dt>side</dt>
<dd>character: right or left hemisphere or midline/whole brain</dd> <dt>primary</dt>
<dd>character: primary cortical region</dd> <dt>secondary</dt>
<dd>character: secondary cortical region</dd> <dt>region</dt>
<dd>character: named region of the brain</dd> <dt>measurement</dt>
<dd>character: morphology measurement</dd> <dt>fMRI_node_1</dt>
<dd>character: fMRI node 1</dd> <dt>fMRI_node_2</dt>
<dd>character: fMRI node 2</dd> <dt>NIDP</dt>
<dd>character: user-friendly name for each NIDP</dd>
</dl>

Format

NIDP annotation data — anno

A data.table with 10 columns and 3935 rows:<dl>
 <dt>gwas_phenotype</dt>
<dd>character: UKB-derived neuroimaging derived phenotype (NIDP)</dd>

 <dt>modality</dt>
<dd>character: MRI neuroimaging modality</dd>

 <dt>atlas</dt>
<dd>character: neuroimaging cortical atlas</dd>

 <dt>side</dt>
<dd>character: right or left hemisphere or midline/whole brain</dd>

 <dt>primary</dt>
<dd>character: primary cortical region</dd>

 <dt>secondary</dt>
<dd>character: secondary cortical region</dd>

 <dt>region</dt>
<dd>character: named region of the brain</dd>

 <dt>measurement</dt>
<dd>character: morphology measurement</dd>

 <dt>fMRI_node_1</dt>
<dd>character: fMRI node 1</dd>

 <dt>fMRI_node_2</dt>
<dd>character: fMRI node 2</dd>

 <dt>NIDP</dt>
<dd>character: user-friendly name for each NIDP</dd>


</dl>

anno: NIDP annotation data

Description

Arguments

Value

Format