check_db

Check if the NeuroimaGene database exists in the proper location prior to running the query and prompt user to download if not.

Installation

Contains functions to query and visualize the Neuroimaging features
associated with genetically regulated gene expression (GReX). The primary utility,
neuroimaGene(), relies on a list of user-defined genes and returns a table of
neuroimaging features (NIDPs) associated with each gene. This resource
is designed to assist in the interpretation of genome-wide and transcriptome-wide
association studies that evaluate brain related traits. Bledsoe (2024)
<doi:10.1016/j.ajhg.2024.06.002>. In addition there are several visualization
functions that generate summary plots and 2-dimensional visualizations of regional
brain measures. Mowinckel (2020).

Xavier Bledsoe

neuroimaGene

Transcriptomic Atlas of Neuroimaging Derived Phenotypes

Eric Gamazon

check_db function

<dl><dt>timeout</dt>
<dd>time to spend downloading the NeuroimaGene database in seconds (default = 900)</dd></dl>

Arguments

Check neuroimaGene database downloaded — check_db

<dl>

<dt>timeout</dt>
<dd>time to spend downloading the NeuroimaGene database in seconds (default = 900)</dd>

</dl>

check_db: Check neuroimaGene database downloaded

Description

Usage

Value

Arguments

Examples