neuroimaGene (version 0.1.2)

plot_nidps: NIDP summary plot of NeuroimaGene object

Description

Generate overview plot of the neuroimagene object according to nidps

Usage

plot_nidps(
  ng_obj,
  maxNidps = 30,
  title = NA,
  shortnames = TRUE,
  mag = TRUE,
  verbose = FALSE
)

Value

a ggplot class object detailing mean effect size magnitude per NIDP, colored by brain region

Arguments

ng_obj

NeuroimaGene Object

maxNidps

maximum number of NIDPs to visualize. default=30

title

optional title tag for the plot

shortnames

optional boolean tag for simplified names. Default to TRUE

mag

boolean to present effect sizes by magnitude rather than as a vector. Default to TRUE

verbose

print runtime messages to R console. Default to FALSE

Examples

gene_list <- c('TRIM35', 'PROSER3', 'EXOSC6', 'PICK1', 'UPK1A', 'ESPNL', 'ZIC4')
ng <- neuroimaGene(gene_list, atlas = NA, mtc = 'BH', vignette = TRUE)
plot_nidps(ng)