ngstk (version 0.2.3)

format_pp_meta_gender: To format ProteinPaint input meta data of gender

Description

To format ProteinPaint input meta data of gender

Usage

format_pp_meta_gender(raw_meta, outfn = NULL, gender_group = "Gender",
  male_value = "Male", female_value = "Female",
  male_color = "#c20b01", female_color = "#196abd", ...)

Arguments

raw_meta

A data.frame contain cols of 'sample', 'term', 'group', 'value', 'color' and 'legendorder'

outfn

Output file, default is NULL and not output to file

gender_group

Name of age group, default is 'Gender'

male_value

Value of male, default is 'Male'

female_value

Value of female, default is 'Female'

male_color

Color of male, default is '#c20b01'

female_color

Color of female, default is '#196abd'

...

Parameters pass to set_colors

Value

A data frame

Examples

# NOT RUN {
meta_template <- system.file('extdata', 
'demo/proteinpaint/heatmap_meta_template.txt', package = 'ngstk')
raw_meta <- read.table(meta_template, sep = '\t', header = TRUE)
term <- group <- 'Gender'
raw_meta$term <- term
raw_meta$group <- group
raw_meta$value <- c(rep(c('Male', 'Female'), 3), 'Male')
meta_gender <- format_pp_meta_gender(raw_meta)
# }