geneinfo_human

A data.frame/tibble describing HGNC human gene symbols, their entrez ids and the MGI mouse gene symbols and entrez ids of the one-one orthologs as determined via NCBI's homologene db and biomaRt ensembl db.

datasets

This package allows you the investigate intercellular communication from a computational perspective. More specifically, it allows to investigate how interacting cells influence each other's gene expression. Functionalities of this package (e.g. including predicting extracellular upstream regulators and their affected target genes) build upon a probabilistic model of ligand-target links that was inferred by data-integration.

Robin Browaeys

nichenetr

NicheNet: Modeling Intercellular Communication by Linking Ligands to Target Genes

geneinfo_human function

A data frame/tibble<dl class="dl-horizontal">
 <dt>symbol</dt><dd>human gene symbol</dd>
 <dt>entrez</dt><dd>human gene entrez</dd>
 <dt>entrez_mouse</dt><dd>mouse homolog gene entrez</dd>
 <dt>symbol_mouse</dt><dd>mouse homolog gene symbol</dd>
 </dl>

Format

Gene annotation information — geneinfo_human

A data frame/tibble<dl class='dl-horizontal'>
 <dt>symbol</dt><dd>human gene symbol</dd>
 <dt>entrez</dt><dd>human gene entrez</dd>
 <dt>entrez_mouse</dt><dd>mouse homolog gene entrez</dd>
 <dt>symbol_mouse</dt><dd>mouse homolog gene symbol</dd>
 </dl>

geneinfo_human: Gene annotation information

Description

Usage

Arguments

Format