hyperparameter_list

datasets

This package allows you the investigate intercellular communication from a computational perspective. More specifically, it allows to investigate how interacting cells influence each other's gene expression. Functionalities of this package (e.g. including predicting extracellular upstream regulators and their affected target genes) build upon a probabilistic model of ligand-target links that was inferred by data-integration.

Robin Browaeys

nichenetr

NicheNet: Modeling Intercellular Communication by Linking Ligands to Target Genes

hyperparameter_list function

A list<dl class="dl-horizontal">
 <dt>lr_sig_hub</dt><dd>ligand-signaling network hub correction factor</dd>
 <dt>gr_hub</dt><dd>gene regulatory network hub correction factor</dd>
 <dt>ltf_cutoff</dt><dd>cutoff on PPR scores</dd>
 <dt>damping_factor</dt><dd>damping factor used in the PPR algorithm</dd>
 </dl>

Format

Optimized hyperparameter values — hyperparameter_list

A list<dl class='dl-horizontal'>
 <dt>lr_sig_hub</dt><dd>ligand-signaling network hub correction factor</dd>
 <dt>gr_hub</dt><dd>gene regulatory network hub correction factor</dd>
 <dt>ltf_cutoff</dt><dd>cutoff on PPR scores</dd>
 <dt>damping_factor</dt><dd>damping factor used in the PPR algorithm</dd>
 </dl>

hyperparameter_list: Optimized hyperparameter values

Description

Usage

Arguments

Format