optimized_source_weights_df

A data.frame/tibble describing weight associated to each data source. These weights will be used for weighted aggregagion of source networks and were determined via parameter optimization (see NicheNet paper).

datasets

This package allows you the investigate intercellular communication from a computational perspective. More specifically, it allows to investigate how interacting cells influence each other's gene expression. Functionalities of this package (e.g. including predicting extracellular upstream regulators and their affected target genes) build upon a probabilistic model of ligand-target links that was inferred by data-integration.

Robin Browaeys

nichenetr

NicheNet: Modeling Intercellular Communication by Linking Ligands to Target Genes

optimized_source_weights_df function

A data frame/tibble<dl class="dl-horizontal">
 <dt>source</dt><dd>name of data source</dd>
 <dt>weight</dt><dd>weight associated to a data source</dd>
 </dl>

Format

Optimized data source weights — optimized_source_weights_df

A data frame/tibble<dl class='dl-horizontal'>
 <dt>source</dt><dd>name of data source</dd>
 <dt>weight</dt><dd>weight associated to a data source</dd>
 </dl>

optimized_source_weights_df: Optimized data source weights

Description

Usage

Arguments

Format