nlme (version 3.1-1)

plot.Variogram: Plot a Variogram Object

Description

an xyplot of the semi-variogram versus the distances is produced. If smooth = TRUE, a loess smoother is added to the plot. If showModel = TRUE and object includes an "modelVariog" attribute, the corresponding semi-variogram is added to the plot.

Usage

plot(object, smooth, showModel, sigma, span, xlab, ylab, type, ylim, ...)

Arguments

object
an object inheriting from class Variogram, consisting of a data frame with two columns named variog and dist, representing the semi-variogram values and the corresponding distances.
smooth
an optional logical value controlling whether a loess smoother should be added to the plot. Defaults to TRUE, when showModel is FALSE.
showModel
an optional logical value controlling whether the semi-variogram corresponding to an "modelVariog" attribute of object, if any is present, should be added to the plot. Defaults to TRUE, when the "model
sigma
an optional numeric value used as the height of a horizontal line displayed in the plot. Can be used to represent the process standard deviation. Default is NULL, implying that no horizontal line is drawn.
span
an optional numeric value with the smoothing parameter for the loess fit. Default is 0.6.
xlab,ylab
optional character strings with the x- and y-axis labels. Default respectively to "Distance" and "SemiVariogram".
type
an optional character indicating the type of plot. Defaults to "p".
ylim
an optional numeric vector with the limits for the y-axis. Defaults to c(0, max(object$variog)).
...
optional arguments passed to the Trellis xyplot function.

Value

  • an xyplot Trellis plot.

See Also

Variogram, xyplot, loess

Examples

Run this code
data(Ovary)
fm1 <- lme(follicles ~ sin(2*pi*Time) + cos(2*pi*Time), Ovary)
plot(Variogram(fm1, form = ~ Time | Mare, maxDist = 0.7))

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