# corSymm

0th

Percentile

##### General Correlation Structure

This function is a constructor for the corSymm class, representing a general correlation structure. The internal representation of this structure, in terms of unconstrained parameters, uses the spherical parametrization defined in Pinheiro and Bates (1996). Objects created using this constructor must later be initialized using the appropriate Initialize method.

Keywords
models
##### Usage
corSymm(value, form, fixed)
##### Arguments
value

an optional vector with the parameter values. Default is numeric(0), which results in a vector of zeros of appropriate dimension being assigned to the parameters when object is initialized (corresponding to an identity correlation structure).

form

a one sided formula of the form ~ t, or ~ t | g, specifying a time covariate t and, optionally, a grouping factor g. A covariate for this correlation structure must be integer valued. When a grouping factor is present in form, the correlation structure is assumed to apply only to observations within the same grouping level; observations with different grouping levels are assumed to be uncorrelated. Defaults to ~ 1, which corresponds to using the order of the observations in the data as a covariate, and no groups.

fixed

an optional logical value indicating whether the coefficients should be allowed to vary in the optimization, or kept fixed at their initial value. Defaults to FALSE, in which case the coefficients are allowed to vary.

##### Value

an object of class corSymm representing a general correlation structure.

##### References

Pinheiro, J.C. and Bates., D.M. (1996) "Unconstrained Parametrizations for Variance-Covariance Matrices", Statistics and Computing, 6, 289-296.

Pinheiro, J.C., and Bates, D.M. (2000) "Mixed-Effects Models in S and S-PLUS", Springer.

Initialize.corSymm, summary.corSymm

• corSymm
##### Examples
# NOT RUN {
## covariate is observation order and grouping factor is Subject
cs1 <- corSymm(form = ~ 1 | Subject)

# Pinheiro and Bates, p. 225
cs1CompSymm <- corCompSymm(value = 0.3, form = ~ 1 | Subject)
cs1CompSymm <- Initialize(cs1CompSymm, data = Orthodont)
corMatrix(cs1CompSymm)

# Pinheiro and Bates, p. 226
cs1Symm <- corSymm(value =
c(0.2, 0.1, -0.1, 0, 0.2, 0),
form = ~ 1 | Subject)
cs1Symm <- Initialize(cs1Symm, data = Orthodont)
corMatrix(cs1Symm)

# example gls(..., corSpher ...)
# Pinheiro and Bates, pp. 261, 263
fm1Wheat2 <- gls(yield ~ variety - 1, Wheat2)
# p. 262
fm2Wheat2 <- update(fm1Wheat2, corr =
corSpher(c(28, 0.2),
form = ~ latitude + longitude, nugget = TRUE))

# example gls(..., corSymm ... )
# Pinheiro and Bates, p. 251
fm1Orth.gls <- gls(distance ~ Sex * I(age - 11), Orthodont,
correlation = corSymm(form = ~ 1 | Subject),
weights = varIdent(form = ~ 1 | age))

# }

Documentation reproduced from package nlme, version 3.1-145, License: GPL (>= 2) | file LICENCE

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