create_unbalanced_tree

create an unbalanced tree out of branching times

Simulate DNA sequences for the node substitution model.
In the node substitution model, substitutions accumulate additionally
during a speciation event, providing a potential mechanistic explanation for
substitution rate variation. This package provides tools to simulate
such a process, simulate a reference process with only substitutions along
the branches, and provides tools to infer phylogenies from alignments. More
information can be found in Janzen (2021) <doi:10.1093/sysbio/syab085>.

Thijs Janzen

nodeSub

Simulate DNA Alignments Using Node Substitutions

create_unbalanced_tree function

<dl><dt>brts</dt>
<dd>vector of branching times</dd></dl>

Arguments

create an unbalanced tree out of branching times — create_unbalanced_tree

<dl>

<dt>brts</dt>
<dd>vector of branching times</dd>

</dl>

create_unbalanced_tree: create an unbalanced tree out of branching times

Description

Usage

Value

Arguments