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noia (version 0.94.1)

Implementation of the Natural and Orthogonal InterAction (NOIA) model

Description

The NOIA model, as described extensively in Alvarez-Castro & Carlborg (2007), is a framework facilitating the estimation of genetic effects and genotype-to-phenotype maps. This package provides the basic tools to perform linear and multilinear regressions from real populations (provided the phenotype and the genotype of every individuals), estimating the genetic effects from different reference points, the genotypic values, and the decomposition of genetic variances in a multi-locus, 2 alleles system. This package is presented in Le Rouzic & Alvarez-Castro (2008).

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Version

Install

install.packages('noia')

Monthly Downloads

225

Version

0.94.1

License

GPL-2

Maintainer

Arnaud Le Rouzic Arne B Gjuvsland arnegjuvslandumbno

Last Published

April 20th, 2010

Functions in noia (0.94.1)

NOIA package

Implementation of the Natural and Orthogonal InterAction (NOIA) model
Genetic effects

Genetic Effects
print.noia

Printing Genetic Regressions and GP map analyses
Genotype-to-Phenotype map

Genotype-to-Phenotype Mapping
Genotype names

Names of Genotypes
GP map analysis

Noia analysis of genotype-to-phenotype (GP) maps in ideal populations
Variance decomposition

Decomposition of Genetic Variance
NOIA matrix manipulation

Matrix algebra in the NOIA framework.
Multilinear tools

Tools for the Multilinear Regression
Genetic regression

Linear and Multilinear Genetic Regressions
Simulate population

Simulates a Population from a Genotype-Phenotype Map
Effects names

Names of Genetic Effects