CoreSanityChecks

specifies the length (in unit of time) over which the simulation should be run.

length.sim

specifies the maximum number of hosts that can be infected in the simulation.

max.infected

number of initially infected individuals.

init.individuals

Checks if the simulator can start: did the user provide a length, a maximum number of infected individuals and a number of "seeding" individuals?

internal

The aim of 'nosoi' (pronounced no.si) is to provide a flexible agent-based stochastic transmission chain/epidemic simulator (Lequime et al. in prep). It is named after the daimones of plague, sickness and disease that escaped Pandora's jar in the Greek mythology. 'nosoi' is able to take into account the influence of multiple variable on the transmission process (e.g. dual-host systems (such as arboviruses), within-host viral dynamics, transportation, population structure), alone or taken together, to create complex but relatively intuitive epidemiological simulations.

CoreSanityChecks: Checks if the simulator can start

Description

Usage

Arguments