MatrixSanityChecks

transition matrix (probabilities) to go from location A (row) to B (column)

structure.matrix

which state (i.e. location) the initially infected individuals are located.

init.structure

Checks if the transition matrix is properly formatted given the user's input and nosoi's requirements.

internal

The aim of 'nosoi' (pronounced no.si) is to provide a flexible agent-based stochastic transmission chain/epidemic simulator (Lequime et al. in prep). It is named after the daimones of plague, sickness and disease that escaped Pandora's jar in the Greek mythology. 'nosoi' is able to take into account the influence of multiple variable on the transmission process (e.g. dual-host systems (such as arboviruses), within-host viral dynamics, transportation, population structure), alone or taken together, to create complex but relatively intuitive epidemiological simulations.

Sebastian Lequime

MatrixSanityChecks: Checks if the matrix is properly formatted

Description

Usage

Arguments