add_node_tip

transmission tree of class <code>treedata</code>, result of <code><a rd-options="" href="/link/getTransmissionTree?package=nosoi&version=1.0.2" data-mini-rdoc="nosoi::getTransmissionTree">getTransmissionTree</a></code>

tree

host

time

label

state

Add a tip to the transmission tree corresponding to the sampled individual.

internal

The aim of 'nosoi' (pronounced no.si) is to provide a flexible agent-based stochastic transmission chain/epidemic simulator (Lequime et al. bioRxiv 2020.03.03.973107). It is named after the daimones of plague, sickness and disease that escaped Pandora's jar in the Greek mythology. 'nosoi' is able to take into account the influence of multiple variable on the transmission process (e.g. dual-host systems (such as arboviruses), within-host viral dynamics, transportation, population structure), alone or taken together, to create complex but relatively intuitive epidemiological simulations.

Sebastian Lequime

nosoi

A Forward Agent-Based Transmission Chain Simulator

Paul Bastide

Simon Dellicour

Philippe Lemey

Guy Baele

add_node_tip function

transmission tree of class <code>treedata</code>, result of <code><a rd-options='' href='getTransmissionTree'>getTransmissionTree</a></code>

Add one tip — add_node_tip

Add one tip

add_node_tip: Add one tip

Description

Usage

Arguments

Value