get_position

a tibble extracted from a <code>treedata</code> object.

tdata

node

time

Find the position on the branch above the node of the times sample.
 Warning: The node needs to be extracted with <code><a rd-options="" href="/link/get_node?package=nosoi&version=1.0.2" data-mini-rdoc="nosoi::get_node">get_node</a></code>.
 Result of this function is to be used in <code><a rd-options="ape" href="/link/bind.tree?package=nosoi&version=1.0.2&to=ape" data-mini-rdoc="ape::bind.tree">bind.tree</a></code>

internal

The aim of 'nosoi' (pronounced no.si) is to provide a flexible agent-based stochastic transmission chain/epidemic simulator (Lequime et al. bioRxiv 2020.03.03.973107). It is named after the daimones of plague, sickness and disease that escaped Pandora's jar in the Greek mythology. 'nosoi' is able to take into account the influence of multiple variable on the transmission process (e.g. dual-host systems (such as arboviruses), within-host viral dynamics, transportation, population structure), alone or taken together, to create complex but relatively intuitive epidemiological simulations.

Sebastian Lequime

nosoi

A Forward Agent-Based Transmission Chain Simulator

Paul Bastide

Simon Dellicour

Philippe Lemey

Guy Baele

get_position function

Find the position on the branch above the node of the times sample.
 Warning: The node needs to be extracted with <code><a rd-options='' href='get_node'>get_node</a></code>.
 Result of this function is to be used in <code><a rd-options='ape' href='bind.tree'>bind.tree</a></code>

get_position: Get Position on branch

Description

Usage

Arguments

Value

See Also