numberInfectedStates

state table, result of function <code><a rd-options="" href="/link/nosoiSim?package=nosoi&version=1.0.3" data-mini-rdoc="nosoi::nosoiSim">nosoiSim</a></code>

table.states

For a given time t, this function returns the number of infected active units.

internal

The aim of 'nosoi' (pronounced no.si) is to provide a flexible agent-based stochastic transmission chain/epidemic simulator (Lequime et al. bioRxiv 2020.03.03.973107). It is named after the daimones of plague, sickness and disease that escaped Pandora's jar in the Greek mythology. 'nosoi' is able to take into account the influence of multiple variable on the transmission process (e.g. dual-host systems (such as arboviruses), within-host viral dynamics, transportation, population structure), alone or taken together, to create complex but relatively intuitive epidemiological simulations.

Sebastian Lequime

nosoi

A Forward Agent-Based Transmission Chain Simulator

Paul Bastide

Simon Dellicour

Philippe Lemey

Guy Baele

numberInfectedStates function

state table, result of function <code><a rd-options='' href='nosoiSim'>nosoiSim</a></code>

numberInfectedStates: Number of active infected hosts at time t

Description

Usage

Arguments

Value

See Also