nosoiSimConstructor

Creates a <code>nosoiSim</code> object.

internal

The aim of 'nosoi' (pronounced no.si) is to provide a flexible agent-based stochastic transmission chain/epidemic simulator (Lequime et al. Methods in Ecology and Evolution 11:1002-1007). It is named after the daimones of plague, sickness and disease that escaped Pandora's jar in the Greek mythology. 'nosoi' is able to take into account the influence of multiple variable on the transmission process (e.g. dual-host systems (such as arboviruses), within-host viral dynamics, transportation, population structure), alone or taken together, to create complex but relatively intuitive epidemiological simulations.

Sebastian Lequime

nosoi

A Forward Agent-Based Transmission Chain Simulator

Paul Bastide

Simon Dellicour

Philippe Lemey

Guy Baele

Thijs Janzen

nosoiSimConstructor function

<dl><dt>total.time</dt>
<dd>total time of the simulation</dd>
<dt>type</dt>
<dd>population structure (one of "single or "dual)</dd>
<dt>pop.A</dt>
<dd>an object of class <code>nosoiSimOne</code> for population A</dd>
<dt>pop.B</dt>
<dd>an object of class <code>nosoiSimOne</code> for population B</dd></dl>

Arguments

nosoiSim Constructor — nosoiSimConstructor

<dl>

<dt>total.time</dt>
<dd>total time of the simulation</dd>


<dt>type</dt>
<dd>population structure (one of "single or "dual)</dd>


<dt>pop.A</dt>
<dd>an object of class <code>nosoiSimOne</code> for population A</dd>


<dt>pop.B</dt>
<dd>an object of class <code>nosoiSimOne</code> for population B</dd>

</dl>

nosoiSimConstructor: nosoiSim Constructor

Description

Usage

Value

Arguments