nprcgenekeepr (version 1.0.8)

addIdRecords: addIdRecords Adds Ego records added having NAs for parent IDs

Description

addIdRecords Adds Ego records added having NAs for parent IDs

Usage

addIdRecords(ids, fullPed, partialPed)

Value

Pedigree with Ego records added having NAs for parent IDs

Arguments

ids

character vector of IDs to be added as Ego records having NAs for parent IDs

fullPed

a trimmed pedigree

partialPed

a trimmed pedigree dataframe with uninformative founders removed.

Examples

uPedOne <- data.frame(
  id = c("d1", "s2", "d2", "o1", "o2", "o3", "o4"),
  sire = c("s0", "s4", NA, "s1", "s1", "s2", "s2"),
  dam = c("d0", "d4", NA, "d1", "d2", "d2", "d2"),
  sex = c("F", "M", "F", "F", "F", "F", "M"),
  stringsAsFactors = FALSE
)
pedOne <- data.frame(
  id = c("s1", "d1", "s2", "d2", "o1", "o2", "o3", "o4"),
  sire = c(NA, "s0", "s4", NA, "s1", "s1", "s2", "s2"),
  dam = c(NA, "d0", "d4", NA, "d1", "d2", "d2", "d2"),
  sex = c("M", "F", "M", "F", "F", "F", "F", "M"),
  stringsAsFactors = FALSE
)
pedOne[!pedOne$id %in% uPedOne$id, ]
newPed <- addIdRecords(ids = "s1", pedOne, uPedOne)
pedOne[!pedOne$id %in% newPed$id, ]
newPed[newPed$id == "s1", ]