Pedigree curation function
getPossibleCols()A character vector of the possible columns that can be in a studbook. The possible columns are as follows:
-- character vector with unique identifier for an individual
-- character vector with unique identifier for an
individual's father (NA if unknown).
-- character vector with unique identifier for an
individual's mother (NA if unknown).
-- factor (levels: "M", "F", "U") Sex specifier for an individual
-- integer vector with the generation number of the individual
-- Date or N (optional) with the individual's birth
date
-- Date or NA (optional) with the individual's exit
date
(death, or departure if applicable)
-- character vector or NA (optional) that
indicates the geographic population to which the individual belongs.
-- numeric or NA (optional) indicating the individual's
current age or age at exit.
-- an optional logical argument indicating whether or
not the id is part of the extant population.
-- character vector or NA (optional) that indicates
the name of the facility that the individual was imported from.
NA indicates the individual was not imported.
-- an optional factor indicating the status of an
individual with levels ALIVE, DEAD, and SHIPPED.
-- character vector or NA (optional) that
indicates the restricted status of an animal. "Nonrestricted" animals
are generally assumed to be naive.
-- character vector or NA (optional) indicating the
specific pathogen-free status of an individual.
-- character vector indicating the vasectomy/ovariectomy
status of an animal where NA indicates an intact animal and all other
values indicate surgical alteration.
-- integer vector indicating generation numbers for each id, starting at 0 for individuals lacking IDs for both parents.
library(nprcgenekeepr)
getPossibleCols()
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