exampleNprcgenekeeprConfig

A loadable version of the example
configuration file <code>example_nprcgenekeepr_config</code>.
It contains a working version of a nprcgenekeepr configuration
file created at the SNPRC.
Users of LabKey's EHR can adapt it to their systems and put it
in their home directory. Instructions are embedded as comments
within the file.

datasets

Provides genetic tools for colony management and is a derivation
of the work in Amanda Vinson and Michael J Raboin (2015)
<https://pmc.ncbi.nlm.nih.gov/articles/PMC4671785/> "A Practical
Approach for Designing Breeding Groups to Maximize Genetic Diversity in a
Large Colony of Captive Rhesus Macaques ('Macaca' 'mulatta')".
It provides a 'Shiny' application with an exposed API.
The application supports five groups of functions:
(1) Quality control of studbooks contained in text files or 'Excel'
workbooks and of pedigrees within 'LabKey' Electronic Health Records
(EHR);
(2) Creation of pedigrees from a list of animals using the 'LabKey' EHR
integration;
(3) Creation and display of an age by sex pyramid plot of the living
animals within the designated pedigree;
(4) Generation of genetic value analysis reports; and
(5) Creation of potential breeding groups with and without proscribed sex
ratios and defined maximum kinships.

R. Mark Sharp

nprcgenekeepr

Genetic Tools for Colony Management

Michael Raboin

Terry Therneau

Amanda Vinson

Matthew Schultz

Southwest National Primate Research Center NIH grant P51 RR13986 

Oregon National Primate Research Center grant P51 OD011092 

exampleNprcgenekeeprConfig function

An object of class <code>character</code> of length 34.

Format

Example nprcgenekeepr configuration file (loadable) — exampleNprcgenekeeprConfig

Example nprcgenekeepr configuration file (loadable)

exampleNprcgenekeeprConfig: Example nprcgenekeepr configuration file (loadable)

Description

Usage

Arguments

Format

Examples