Learn R Programming

nucleoSim (version 1.0.2)

Generate synthetic nucleosome maps

Description

This package can generate a synthetic map with reads covering the nucleosome regions as well as a synthetic map with forward and reverse reads emulating next-generation sequencing. The user has choice between three different distributions for the read positioning: Normal, Student and Uniform.

Copy Link

Version

Version

1.0.2

License

Artistic-2.0

Issues

0

Pull Requests

0

Stars

2

Forks

1

Maintainer

Astrid Deschenes

Last Published

February 15th, 2017

Functions in nucleoSim (1.0.2)

createNucReadsFromNucMap

Create a synthetic nucleosome reads from a synthetic nucleosome map
nucleoSim-package

nucleoSim: Generate synthetic nucleosome maps
syntheticNucMapFromDist

Generate a synthetic nucleosome map containing complete sequences
syntheticNucMapFromDistValidation

Parameter validation for the syntheticNucMapFromDist function
plot.syntheticNucMap

Generate a graph of a synthetic nucleosome map
plot.syntheticNucReads

Generate a graph of a synthetic nucleosome map containing forward and reverse reads
syntheticNucReadsValidation

Subsection of parameter validation for identical parameters between syntheticNucReadsFromMap and syntheticNucReadsFromDist functions.
syntheticNucReadsFromDist

Generate a synthetic nucleosome map containing forward and reverse reads (paired-end reads)
syntheticNucReadsFromMap

Generate a synthetic nucleosome map containing forward and reverse reads